| Element | Missed Instructions | Cov. | Missed Branches | Cov. | Missed | Cxty | Missed | Lines | Missed | Methods |
| Total | 503 of 544 | 7% | 46 of 50 | 8% | 45 | 46 | 117 | 126 | 20 | 21 |
| IndexFastaStream(Entry) | 0% | 0% | 3 | 3 | 17 | 17 | 1 | 1 | ||
| charAt(int) | 0% | 0% | 5 | 5 | 10 | 10 | 1 | 1 | ||
| getLengthByIndex(int) | 0% | 0% | 5 | 5 | 12 | 12 | 1 | 1 | ||
| main(String[]) | 0% | 0% | 2 | 2 | 13 | 13 | 1 | 1 | ||
| getContigByIndex(int) | 0% | 0% | 4 | 4 | 12 | 12 | 1 | 1 | ||
| isIndexed(Entry) | 53% | 50% | 4 | 5 | 9 | 18 | 0 | 1 | ||
| useIndex() | 0% | 0% | 3 | 3 | 5 | 5 | 1 | 1 | ||
| getContigs() | 0% | 0% | 3 | 3 | 9 | 9 | 1 | 1 | ||
| setExtensions() | 0% | 0% | 2 | 2 | 7 | 7 | 1 | 1 | ||
| getReferenceSequence(int) | 0% | 0% | 3 | 3 | 7 | 7 | 1 | 1 | ||
| getSubSequence(int, int) | 0% | n/a | 1 | 1 | 2 | 2 | 1 | 1 | ||
| setContigByIndex(int) | 0% | n/a | 1 | 1 | 4 | 4 | 1 | 1 | ||
| setFromChar(char[]) | 0% | n/a | 1 | 1 | 2 | 2 | 1 | 1 | ||
| getCharSubSequence(int, int) | 0% | n/a | 1 | 1 | 1 | 1 | 1 | 1 | ||
| length() | 0% | n/a | 1 | 1 | 1 | 1 | 1 | 1 | ||
| getIndexSeqFile() | 0% | n/a | 1 | 1 | 1 | 1 | 1 | 1 | ||
| getFastaIndex() | 0% | n/a | 1 | 1 | 1 | 1 | 1 | 1 | ||
| getContig() | 0% | n/a | 1 | 1 | 1 | 1 | 1 | 1 | ||
| copy() | 0% | n/a | 1 | 1 | 1 | 1 | 1 | 1 | ||
| getFormatType() | 0% | n/a | 1 | 1 | 1 | 1 | 1 | 1 | ||
| writeToStream(Writer) | 0% | n/a | 1 | 1 | 1 | 1 | 1 | 1 |