| contigRearrange(Feature, int) |  | 0% |  | 0% | 6 | 6 | 31 | 31 | 1 | 1 |
| getStopCodons(Range, int) |   | 51% |   | 37% | 17 | 21 | 27 | 60 | 0 | 1 |
| getSubSequence(Range, int) |   | 40% |   | 50% | 6 | 9 | 12 | 26 | 0 | 1 |
| setCache(int, int, char[], int, StringVector, byte[], int, int) |   | 71% |   | 78% | 3 | 8 | 4 | 20 | 0 | 1 |
| getMatchingCodons(Range, int, StringVector) |   | 78% |   | 73% | 7 | 14 | 8 | 42 | 0 | 1 |
| getSubSequenceC(Range, int) |   | 68% |   | 75% | 3 | 9 | 7 | 28 | 0 | 1 |
| getStopOrStartCodons(Range, int, StringVector) |   | 91% |   | 83% | 7 | 22 | 6 | 57 | 0 | 1 |
| isCodon(char, char, char, StringVector) |  | 0% |  | 0% | 2 | 2 | 4 | 4 | 1 | 1 |
| getStartCodonCache() |  | 0% |  | 0% | 2 | 2 | 4 | 4 | 1 | 1 |
| reverseComplement(Feature) |   | 86% |   | 50% | 2 | 3 | 2 | 21 | 0 | 1 |
| deleteRange(Range) |   | 81% | | n/a | 0 | 1 | 2 | 15 | 0 | 1 |
| reverseComplement() |   | 73% | | n/a | 0 | 1 | 2 | 13 | 0 | 1 |
| complementRange(Range) |   | 58% | | n/a | 0 | 1 | 2 | 6 | 0 | 1 |
| clearCodonCache() |  | 0% | | n/a | 1 | 1 | 3 | 3 | 1 | 1 |
| addSequenceChangeListener(SequenceChangeListener, int) |   | 80% |   | 50% | 2 | 3 | 2 | 6 | 0 | 1 |
| complement(char) |  | 94% |   | 94% | 1 | 17 | 1 | 18 | 0 | 1 |
| isStopCodon(char, char, char) |  | 93% |   | 75% | 3 | 7 | 1 | 6 | 0 | 1 |
| getIndexOfBase(char) |  | 83% |   | 80% | 1 | 5 | 1 | 6 | 0 | 1 |
| isMatchingCodon(String, int, int, String) |  | 100% |   | 85% | 2 | 8 | 0 | 16 | 0 | 1 |
| addBases(int, int, String) |  | 100% |  | 100% | 0 | 2 | 0 | 13 | 0 | 1 |
| Bases(Sequence) |  | 100% |  | 100% | 0 | 2 | 0 | 11 | 0 | 1 |
| getBaseAt(int) |  | 100% |  | 100% | 0 | 3 | 0 | 5 | 0 | 1 |
| fireSequenceChangeEvent(SequenceChangeEvent) |  | 100% |   | 83% | 1 | 4 | 0 | 10 | 0 | 1 |
| reverseComplement(char[]) |  | 100% |  | 100% | 0 | 2 | 0 | 7 | 0 | 1 |
| reverseComplement(String) |  | 100% |  | 100% | 0 | 2 | 0 | 4 | 0 | 1 |
| removeSequenceChangeListener(SequenceChangeListener) |  | 100% |  | 100% | 0 | 3 | 0 | 6 | 0 | 1 |
| complement(String) |  | 100% |  | 100% | 0 | 2 | 0 | 4 | 0 | 1 |
| static {...} |  | 100% | | n/a | 0 | 1 | 0 | 1 | 0 | 1 |
| isMatchingCodon(String, int, int, StringVector) |  | 100% |  | 100% | 0 | 3 | 0 | 7 | 0 | 1 |
| complement(char[]) |  | 100% |  | 100% | 0 | 2 | 0 | 4 | 0 | 1 |
| getStopCodonCache() |  | 100% |  | 100% | 0 | 2 | 0 | 4 | 0 | 1 |
| getAverageGCPercent() |  | 100% | | n/a | 0 | 1 | 0 | 3 | 0 | 1 |
| getAverageAGPercent() |  | 100% | | n/a | 0 | 1 | 0 | 3 | 0 | 1 |
| truncate(Range) |  | 100% | | n/a | 0 | 1 | 0 | 3 | 0 | 1 |
| isLegalBase(char) |  | 100% |  | 100% | 0 | 6 | 0 | 7 | 0 | 1 |
| getRawPosition(int, int) |  | 100% |  | 100% | 0 | 2 | 0 | 3 | 0 | 1 |
| getTranslation(Range, int, boolean) |  | 100% | | n/a | 0 | 1 | 0 | 2 | 0 | 1 |
| getSpacedTranslation(Range, int, boolean) |  | 100% | | n/a | 0 | 1 | 0 | 2 | 0 | 1 |
| toString() |  | 100% | | n/a | 0 | 1 | 0 | 1 | 0 | 1 |
| getComplementPosition(int) |  | 100% | | n/a | 0 | 1 | 0 | 1 | 0 | 1 |
| getLength() |  | 100% | | n/a | 0 | 1 | 0 | 1 | 0 | 1 |
| getACount() |  | 100% | | n/a | 0 | 1 | 0 | 1 | 0 | 1 |
| getTCount() |  | 100% | | n/a | 0 | 1 | 0 | 1 | 0 | 1 |
| getGCount() |  | 100% | | n/a | 0 | 1 | 0 | 1 | 0 | 1 |
| getCCount() |  | 100% | | n/a | 0 | 1 | 0 | 1 | 0 | 1 |
| getForwardStrand() |  | 100% | | n/a | 0 | 1 | 0 | 1 | 0 | 1 |
| getReverseStrand() |  | 100% | | n/a | 0 | 1 | 0 | 1 | 0 | 1 |
| getSequence() |  | 100% | | n/a | 0 | 1 | 0 | 1 | 0 | 1 |